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Class: SnapGenePlasmidSource

Represents the source of a sequence from the SnapGene plasmid library identified by a SnapGene subpath of https://www.snapgene.com/plasmids/

URI: opencloning_linkml:SnapGenePlasmidSource

classDiagram class SnapGenePlasmidSource click SnapGenePlasmidSource href "../SnapGenePlasmidSource" RepositoryIdSource <|-- SnapGenePlasmidSource click RepositoryIdSource href "../RepositoryIdSource" SnapGenePlasmidSource : database_id SnapGenePlasmidSource : id SnapGenePlasmidSource : input SnapGenePlasmidSource --> "*" Sequence : input click Sequence href "../Sequence" SnapGenePlasmidSource : output SnapGenePlasmidSource --> "0..1" Sequence : output click Sequence href "../Sequence" SnapGenePlasmidSource : output_name SnapGenePlasmidSource : repository_id SnapGenePlasmidSource : repository_name SnapGenePlasmidSource --> "1" RepositoryName : repository_name click RepositoryName href "../RepositoryName" SnapGenePlasmidSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
repository_id 1
String		 The subpath of the plasmid in the SnapGene plasmid library RepositoryIdSource
repository_name 1
RepositoryName		 RepositoryIdSource
input *
Sequence		 The sequences that are an input to this source Source
output 0..1
Sequence		 Identifier of the sequence that is the output of this source Source
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:SnapGenePlasmidSource
native opencloning_linkml:SnapGenePlasmidSource

LinkML Source

Direct

name: SnapGenePlasmidSource
description: Represents the source of a sequence from the SnapGene plasmid library
  identified by a SnapGene subpath of https://www.snapgene.com/plasmids/
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The subpath of the plasmid in the SnapGene plasmid library. Requesting
      the plasmid is possible with https://www.snapgene.com/local/fetch.php?set={category_path}&plasmid={plasmid['subpath']}
      where category_path is the left part of the subpath before the first / and plasmid
      is the subpath after the /.
    pattern: ^.+\/.+$

Induced

name: SnapGenePlasmidSource
description: Represents the source of a sequence from the SnapGene plasmid library
  identified by a SnapGene subpath of https://www.snapgene.com/plasmids/
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The subpath of the plasmid in the SnapGene plasmid library. Requesting
      the plasmid is possible with https://www.snapgene.com/local/fetch.php?set={category_path}&plasmid={plasmid['subpath']}
      where category_path is the left part of the subpath before the first / and plasmid
      is the subpath after the /.
    pattern: ^.+\/.+$
attributes:
  repository_id:
    name: repository_id
    description: The subpath of the plasmid in the SnapGene plasmid library. Requesting
      the plasmid is possible with https://www.snapgene.com/local/fetch.php?set={category_path}&plasmid={plasmid['subpath']}
      where category_path is the left part of the subpath before the first / and plasmid
      is the subpath after the /.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_id
    owner: SnapGenePlasmidSource
    domain_of:
    - RepositoryIdSource
    range: string
    required: true
    pattern: ^.+\/.+$
  repository_name:
    name: repository_name
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_name
    owner: SnapGenePlasmidSource
    domain_of:
    - RepositoryIdSource
    range: RepositoryName
    required: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: SnapGenePlasmidSource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: SnapGenePlasmidSource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: SnapGenePlasmidSource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: SnapGenePlasmidSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: SnapGenePlasmidSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SnapGenePlasmidSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true