Class: SequenceCutSource

Represents the source of a sequence that is a subfragment of another sequence, generated by sequence cutting.

URI: opencloning_linkml:SequenceCutSource

classDiagram class SequenceCutSource click SequenceCutSource href "../SequenceCutSource" Source <|-- SequenceCutSource click Source href "../Source" SequenceCutSource <|-- RestrictionEnzymeDigestionSource click RestrictionEnzymeDigestionSource href "../RestrictionEnzymeDigestionSource" SequenceCutSource : database_id SequenceCutSource : id SequenceCutSource : input SequenceCutSource --> "*" Sequence : input click Sequence href "../Sequence" SequenceCutSource : left_edge SequenceCutSource --> "0..1" SequenceCut : left_edge click SequenceCut href "../SequenceCut" SequenceCutSource : output SequenceCutSource --> "0..1" Sequence : output click Sequence href "../Sequence" SequenceCutSource : output_name SequenceCutSource : right_edge SequenceCutSource --> "0..1" SequenceCut : right_edge click SequenceCut href "../SequenceCut" SequenceCutSource : type

Inheritance

NamedThing
- Source
  - SequenceCutSource
    - RestrictionEnzymeDigestionSource

Slots

Name	Cardinality and Range	Description	Inheritance
left_edge	0..1 SequenceCut		direct
right_edge	0..1 SequenceCut		direct
input	* Sequence	The sequences that are an input to this source	Source
output	0..1 Sequence	Identifier of the sequence that is the output of this source	Source
type	0..1 String	Designates the class	Source
output_name	0..1 String	Used to specify the name of the output sequence	Source
database_id	0..1 Integer	The id of an entity in a database	Source
id	1 Integer	A unique identifier for a thing	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:SequenceCutSource
native	opencloning_linkml:SequenceCutSource

LinkML Source

Direct

name: SequenceCutSource
description: Represents the source of a sequence that is a subfragment of another
  sequence, generated by sequence cutting.
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  left_edge:
    name: left_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: SequenceCut
    required: false
    inlined: true
  right_edge:
    name: right_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: SequenceCut
    required: false
    inlined: true

Induced

name: SequenceCutSource
description: Represents the source of a sequence that is a subfragment of another
  sequence, generated by sequence cutting.
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  left_edge:
    name: left_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: left_edge
    owner: SequenceCutSource
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: SequenceCut
    required: false
    inlined: true
  right_edge:
    name: right_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: right_edge
    owner: SequenceCutSource
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: SequenceCut
    required: false
    inlined: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: SequenceCutSource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: SequenceCutSource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: SequenceCutSource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: SequenceCutSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: SequenceCutSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SequenceCutSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true