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Class: SequenceCut

Represents a cut in a DNA sequence

URI: opencloning_linkml:SequenceCut

classDiagram class SequenceCut click SequenceCut href "../SequenceCut" SequenceCut <|-- RestrictionSequenceCut click RestrictionSequenceCut href "../RestrictionSequenceCut" SequenceCut : cut_watson SequenceCut : overhang

Inheritance

Slots

Name Cardinality and Range Description Inheritance
cut_watson 1
Integer		 The position of the cut in the watson strand direct
overhang 1
Integer		 The length of the overhang that is left after the cut direct

Usages

used by used in type used
SequenceCutSource left_edge range SequenceCut
SequenceCutSource right_edge range SequenceCut

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:SequenceCut
native opencloning_linkml:SequenceCut

LinkML Source

Direct

name: SequenceCut
description: Represents a cut in a DNA sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
attributes:
  cut_watson:
    name: cut_watson
    description: The position of the cut in the watson strand. The cut is made before
      the base at this position (zero-based), so that cut position 1 cuts after the
      first base.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - SequenceCut
    range: integer
    required: true
  overhang:
    name: overhang
    description: The length of the overhang that is left after the cut. It can be
      negative, same meaning as in pydna's `dseq::ovhg` and biopython's `Bio.Restriction.RestrictionType.ovhg`.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - SequenceCut
    range: integer
    required: true

Induced

name: SequenceCut
description: Represents a cut in a DNA sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
attributes:
  cut_watson:
    name: cut_watson
    description: The position of the cut in the watson strand. The cut is made before
      the base at this position (zero-based), so that cut position 1 cuts after the
      first base.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: cut_watson
    owner: SequenceCut
    domain_of:
    - SequenceCut
    range: integer
    required: true
  overhang:
    name: overhang
    description: The length of the overhang that is left after the cut. It can be
      negative, same meaning as in pydna's `dseq::ovhg` and biopython's `Bio.Restriction.RestrictionType.ovhg`.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: overhang
    owner: SequenceCut
    domain_of:
    - SequenceCut
    range: integer
    required: true