Skip to content

Class: SEVASource

Represents the source of a sequence that is identified by a SEVA id

URI: opencloning_linkml:SEVASource

classDiagram class SEVASource click SEVASource href "../SEVASource" RepositoryIdSource <|-- SEVASource click RepositoryIdSource href "../RepositoryIdSource" SEVASource : database_id SEVASource : id SEVASource : input SEVASource --> "*" Sequence : input click Sequence href "../Sequence" SEVASource : output SEVASource --> "0..1" Sequence : output click Sequence href "../Sequence" SEVASource : output_name SEVASource : repository_id SEVASource : repository_name SEVASource --> "1" RepositoryName : repository_name click RepositoryName href "../RepositoryName" SEVASource : sequence_file_url SEVASource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
sequence_file_url 1
String		 The URL of the sequence file, which can refer to a a gb file hosted on the SE... direct
repository_id 1
String		 The SEVA plasmid name RepositoryIdSource
repository_name 1
RepositoryName		 RepositoryIdSource
input *
Sequence		 The sequences that are an input to this source Source
output 0..1
Sequence		 Identifier of the sequence that is the output of this source Source
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:SEVASource
native opencloning_linkml:SEVASource

LinkML Source

Direct

name: SEVASource
description: Represents the source of a sequence that is identified by a SEVA id
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slots:
- sequence_file_url
slot_usage:
  repository_id:
    name: repository_id
    description: The SEVA plasmid name
    pattern: ^pSEVA\d+.*$
  sequence_file_url:
    name: sequence_file_url
    description: The URL of the sequence file, which can refer to a a gb file hosted
      on the SEVA website or an entry in the NCBI.
    required: true

Induced

name: SEVASource
description: Represents the source of a sequence that is identified by a SEVA id
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The SEVA plasmid name
    pattern: ^pSEVA\d+.*$
  sequence_file_url:
    name: sequence_file_url
    description: The URL of the sequence file, which can refer to a a gb file hosted
      on the SEVA website or an entry in the NCBI.
    required: true
attributes:
  sequence_file_url:
    name: sequence_file_url
    description: The URL of the sequence file, which can refer to a a gb file hosted
      on the SEVA website or an entry in the NCBI.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: sequence_file_url
    owner: SEVASource
    domain_of:
    - AddgeneIdSource
    - WekWikGeneIdSource
    - SEVASource
    - IGEMSource
    range: string
    required: true
    pattern: ^https?:\/\/(www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b([-a-zA-Z0-9()@:%_\+.~#?&//=]*)$
  repository_id:
    name: repository_id
    description: The SEVA plasmid name
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_id
    owner: SEVASource
    domain_of:
    - RepositoryIdSource
    range: string
    required: true
    pattern: ^pSEVA\d+.*$
  repository_name:
    name: repository_name
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_name
    owner: SEVASource
    domain_of:
    - RepositoryIdSource
    range: RepositoryName
    required: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: SEVASource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: SEVASource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: SEVASource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: SEVASource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: SEVASource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: SEVASource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true