Class: RestrictionSequenceCut

Represents a cut in a DNA sequence that is made by a restriction enzyme

URI: opencloning_linkml:RestrictionSequenceCut

classDiagram class RestrictionSequenceCut click RestrictionSequenceCut href "../RestrictionSequenceCut" SequenceCut <|-- RestrictionSequenceCut click SequenceCut href "../SequenceCut" RestrictionSequenceCut : cut_watson RestrictionSequenceCut : overhang RestrictionSequenceCut : restriction_enzyme

Inheritance

SequenceCut
- RestrictionSequenceCut

Slots

Name	Cardinality and Range	Description	Inheritance
restriction_enzyme	1 String		direct
cut_watson	1 Integer	The position of the cut in the watson strand	SequenceCut
overhang	1 Integer	The length of the overhang that is left after the cut	SequenceCut

Usages

used by	used in	type	used
RestrictionEnzymeDigestionSource	left_edge	range	RestrictionSequenceCut
RestrictionEnzymeDigestionSource	right_edge	range	RestrictionSequenceCut

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:RestrictionSequenceCut
native	opencloning_linkml:RestrictionSequenceCut

LinkML Source

Direct

name: RestrictionSequenceCut
description: Represents a cut in a DNA sequence that is made by a restriction enzyme
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: SequenceCut
slots:
- restriction_enzyme
slot_usage:
  restriction_enzyme:
    name: restriction_enzyme
    required: true

Induced

name: RestrictionSequenceCut
description: Represents a cut in a DNA sequence that is made by a restriction enzyme
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: SequenceCut
slot_usage:
  restriction_enzyme:
    name: restriction_enzyme
    required: true
attributes:
  restriction_enzyme:
    name: restriction_enzyme
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    exact_mappings:
    - OBI:0000732
    rank: 1000
    alias: restriction_enzyme
    owner: RestrictionSequenceCut
    domain_of:
    - RestrictionSequenceCut
    range: string
    required: true
  cut_watson:
    name: cut_watson
    description: The position of the cut in the watson strand. The cut is made before
      the base at this position (zero-based), so that cut position 1 cuts after the
      first base.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: cut_watson
    owner: RestrictionSequenceCut
    domain_of:
    - SequenceCut
    range: integer
    required: true
  overhang:
    name: overhang
    description: The length of the overhang that is left after the cut. It can be
      negative, same meaning as in pydna's `dseq::ovhg` and biopython's `Bio.Restriction.RestrictionType.ovhg`.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: overhang
    owner: RestrictionSequenceCut
    domain_of:
    - SequenceCut
    range: integer
    required: true