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Class: RestrictionEnzymeDigestionSource

Represents the source of a sequence that is a subfragment of another sequence, generated by sequence cutting using restriction enzymes.

URI: opencloning_linkml:RestrictionEnzymeDigestionSource

classDiagram class RestrictionEnzymeDigestionSource click RestrictionEnzymeDigestionSource href "../RestrictionEnzymeDigestionSource" SequenceCutSource <|-- RestrictionEnzymeDigestionSource click SequenceCutSource href "../SequenceCutSource" RestrictionEnzymeDigestionSource : database_id RestrictionEnzymeDigestionSource : id RestrictionEnzymeDigestionSource : input RestrictionEnzymeDigestionSource --> "*" Sequence : input click Sequence href "../Sequence" RestrictionEnzymeDigestionSource : left_edge RestrictionEnzymeDigestionSource --> "0..1" RestrictionSequenceCut : left_edge click RestrictionSequenceCut href "../RestrictionSequenceCut" RestrictionEnzymeDigestionSource : output RestrictionEnzymeDigestionSource --> "0..1" Sequence : output click Sequence href "../Sequence" RestrictionEnzymeDigestionSource : output_name RestrictionEnzymeDigestionSource : right_edge RestrictionEnzymeDigestionSource --> "0..1" RestrictionSequenceCut : right_edge click RestrictionSequenceCut href "../RestrictionSequenceCut" RestrictionEnzymeDigestionSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
left_edge 0..1
RestrictionSequenceCut		 direct
right_edge 0..1
RestrictionSequenceCut		 direct
input *
Sequence		 The sequences that are an input to this source Source
output 0..1
Sequence		 Identifier of the sequence that is the output of this source Source
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:RestrictionEnzymeDigestionSource
native opencloning_linkml:RestrictionEnzymeDigestionSource

LinkML Source

Direct

name: RestrictionEnzymeDigestionSource
description: Represents the source of a sequence that is a subfragment of another
  sequence, generated by sequence cutting using restriction enzymes.
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: SequenceCutSource
attributes:
  left_edge:
    name: left_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: RestrictionSequenceCut
    required: false
    inlined: true
  right_edge:
    name: right_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: RestrictionSequenceCut
    required: false
    inlined: true

Induced

name: RestrictionEnzymeDigestionSource
description: Represents the source of a sequence that is a subfragment of another
  sequence, generated by sequence cutting using restriction enzymes.
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: SequenceCutSource
attributes:
  left_edge:
    name: left_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: left_edge
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: RestrictionSequenceCut
    required: false
    inlined: true
  right_edge:
    name: right_edge
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: right_edge
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - SequenceCutSource
    - RestrictionEnzymeDigestionSource
    range: RestrictionSequenceCut
    required: false
    inlined: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: RestrictionEnzymeDigestionSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true