Class: PlannotateAnnotationReport

Represents a report of an annotation step using Plannotate

URI: opencloning_linkml:PlannotateAnnotationReport

classDiagram class PlannotateAnnotationReport click PlannotateAnnotationReport href "../PlannotateAnnotationReport" AnnotationReport <|-- PlannotateAnnotationReport click AnnotationReport href "../AnnotationReport" PlannotateAnnotationReport : database PlannotateAnnotationReport : Description PlannotateAnnotationReport : end_location PlannotateAnnotationReport : Feature PlannotateAnnotationReport : fragment PlannotateAnnotationReport : full_length_of_feature_in_db PlannotateAnnotationReport : length_of_found_feature PlannotateAnnotationReport : percent_identity PlannotateAnnotationReport : percent_match_length PlannotateAnnotationReport : sequence PlannotateAnnotationReport : sseqid PlannotateAnnotationReport : start_location PlannotateAnnotationReport : strand PlannotateAnnotationReport : Type PlannotateAnnotationReport : type

Inheritance

AnnotationReport
- PlannotateAnnotationReport

Slots

Name	Cardinality and Range	Description	Inheritance
sseqid	0..1 String		direct
start_location	0..1 Integer		direct
end_location	0..1 Integer		direct
strand	0..1 Integer		direct
percent_identity	0..1 Float		direct
full_length_of_feature_in_db	0..1 Integer		direct
length_of_found_feature	0..1 Integer		direct
percent_match_length	0..1 Float		direct
fragment	0..1 Boolean		direct
database	0..1 String		direct
Feature	0..1 String		direct
Type	0..1 String		direct
Description	0..1 String		direct
sequence	0..1 String		direct
type	0..1 String	Designates the class	AnnotationReport

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:PlannotateAnnotationReport
native	opencloning_linkml:PlannotateAnnotationReport

LinkML Source

Direct

name: PlannotateAnnotationReport
description: Represents a report of an annotation step using Plannotate
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: AnnotationReport
attributes:
  sseqid:
    name: sseqid
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: string
  start_location:
    name: start_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  end_location:
    name: end_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  strand:
    name: strand
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - GenomeCoordinatesSource
    - PlannotateAnnotationReport
    range: integer
  percent_identity:
    name: percent_identity
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: float
  full_length_of_feature_in_db:
    name: full_length_of_feature_in_db
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  length_of_found_feature:
    name: length_of_found_feature
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  percent_match_length:
    name: percent_match_length
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: float
  fragment:
    name: fragment
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: boolean
  database:
    name: database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: string
  Feature:
    name: Feature
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: string
  Type:
    name: Type
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: string
  Description:
    name: Description
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - PlannotateAnnotationReport
    range: string
  sequence:
    name: sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - Primer
    - AssemblyFragment
    - PlannotateAnnotationReport
    range: string

Induced

name: PlannotateAnnotationReport
description: Represents a report of an annotation step using Plannotate
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: AnnotationReport
attributes:
  sseqid:
    name: sseqid
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: sseqid
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: string
  start_location:
    name: start_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: start_location
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  end_location:
    name: end_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: end_location
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  strand:
    name: strand
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: strand
    owner: PlannotateAnnotationReport
    domain_of:
    - GenomeCoordinatesSource
    - PlannotateAnnotationReport
    range: integer
  percent_identity:
    name: percent_identity
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: percent_identity
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: float
  full_length_of_feature_in_db:
    name: full_length_of_feature_in_db
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: full_length_of_feature_in_db
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  length_of_found_feature:
    name: length_of_found_feature
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: length_of_found_feature
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: integer
  percent_match_length:
    name: percent_match_length
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: percent_match_length
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: float
  fragment:
    name: fragment
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: fragment
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: boolean
  database:
    name: database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: database
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: string
  Feature:
    name: Feature
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: Feature
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: string
  Type:
    name: Type
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: Type
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: string
  Description:
    name: Description
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: Description
    owner: PlannotateAnnotationReport
    domain_of:
    - PlannotateAnnotationReport
    range: string
  sequence:
    name: sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: sequence
    owner: PlannotateAnnotationReport
    domain_of:
    - Primer
    - AssemblyFragment
    - PlannotateAnnotationReport
    range: string
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: PlannotateAnnotationReport
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string