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Class: OligoHybridizationSource

Represents the source of a sequence that is generated by oligo hybridization

URI: opencloning_linkml:OligoHybridizationSource

classDiagram class OligoHybridizationSource click OligoHybridizationSource href "../OligoHybridizationSource" Source <|-- OligoHybridizationSource click Source href "../Source" OligoHybridizationSource : database_id OligoHybridizationSource : forward_oligo OligoHybridizationSource --> "1" Primer : forward_oligo click Primer href "../Primer" OligoHybridizationSource : id OligoHybridizationSource : input OligoHybridizationSource --> "*" Sequence : input click Sequence href "../Sequence" OligoHybridizationSource : output OligoHybridizationSource --> "0..1" Sequence : output click Sequence href "../Sequence" OligoHybridizationSource : output_name OligoHybridizationSource : overhang_crick_3prime OligoHybridizationSource : reverse_oligo OligoHybridizationSource --> "1" Primer : reverse_oligo click Primer href "../Primer" OligoHybridizationSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
overhang_crick_3prime 0..1
Integer		 Taken from pydna's dseq::ovhgAn integer describing the length of the crick ... direct
forward_oligo 1
Primer		 The forward oligo used in the hybridization direct
reverse_oligo 1
Primer		 The reverse oligo used in the hybridization direct
input *
Sequence		 The sequences that are an input to this source Source
output 0..1
Sequence		 Identifier of the sequence that is the output of this source Source
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:OligoHybridizationSource
native opencloning_linkml:OligoHybridizationSource

LinkML Source

Direct

name: OligoHybridizationSource
description: Represents the source of a sequence that is generated by oligo hybridization
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
slots:
- overhang_crick_3prime
attributes:
  forward_oligo:
    name: forward_oligo
    description: The forward oligo used in the hybridization
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - OligoHybridizationSource
    range: Primer
    required: true
  reverse_oligo:
    name: reverse_oligo
    description: The reverse oligo used in the hybridization
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - OligoHybridizationSource
    range: Primer
    required: true

Induced

name: OligoHybridizationSource
description: Represents the source of a sequence that is generated by oligo hybridization
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  forward_oligo:
    name: forward_oligo
    description: The forward oligo used in the hybridization
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: forward_oligo
    owner: OligoHybridizationSource
    domain_of:
    - OligoHybridizationSource
    range: Primer
    required: true
  reverse_oligo:
    name: reverse_oligo
    description: The reverse oligo used in the hybridization
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: reverse_oligo
    owner: OligoHybridizationSource
    domain_of:
    - OligoHybridizationSource
    range: Primer
    required: true
  overhang_crick_3prime:
    name: overhang_crick_3prime
    description: Taken from pydna's `dseq::ovhg`An integer describing the length of
      the crick strand overhang in the 5' of the molecule, or 3' of the crick strand
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: overhang_crick_3prime
    owner: OligoHybridizationSource
    domain_of:
    - TextFileSequence
    - ManuallyTypedSource
    - OligoHybridizationSource
    range: integer
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: OligoHybridizationSource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: OligoHybridizationSource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: OligoHybridizationSource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: OligoHybridizationSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: OligoHybridizationSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: OligoHybridizationSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true