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Class: OligoHybridizationSource

Represents the source of a sequence that is generated by oligo hybridization

URI: opencloning_linkml:OligoHybridizationSource

classDiagram class OligoHybridizationSource click OligoHybridizationSource href "../OligoHybridizationSource" Source <|-- OligoHybridizationSource click Source href "../Source" OligoHybridizationSource : database_id OligoHybridizationSource : id OligoHybridizationSource : input OligoHybridizationSource --> "*" SourceInput : input click SourceInput href "../SourceInput" OligoHybridizationSource : output_name OligoHybridizationSource : overhang_crick_3prime OligoHybridizationSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
overhang_crick_3prime 0..1
Integer		 Taken from pydna's dseq::ovhgAn integer describing the length of the crick ... direct
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
input *
SourceInput		 The inputs to this source Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:OligoHybridizationSource
native opencloning_linkml:OligoHybridizationSource

LinkML Source

Direct

name: OligoHybridizationSource
description: Represents the source of a sequence that is generated by oligo hybridization
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
slots:
- overhang_crick_3prime

Induced

name: OligoHybridizationSource
description: Represents the source of a sequence that is generated by oligo hybridization
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  overhang_crick_3prime:
    name: overhang_crick_3prime
    description: Taken from pydna's `dseq::ovhg`An integer describing the length of
      the crick strand overhang in the 5' of the molecule, or 3' of the crick strand
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: overhang_crick_3prime
    owner: OligoHybridizationSource
    domain_of:
    - TextFileSequence
    - ManuallyTypedSource
    - OligoHybridizationSource
    range: integer
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: OligoHybridizationSource
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: OligoHybridizationSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: OligoHybridizationSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  input:
    name: input
    description: The inputs to this source. If the source represents external import
      of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: OligoHybridizationSource
    domain_of:
    - Source
    range: SourceInput
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: OligoHybridizationSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true