Class: IGEMSource

Represents the source of a sequence from an iGEM collection

Inheritance

NamedThing
- Source
  - RepositoryIdSource
    - IGEMSource

Slots

Name	Cardinality and Range	Description	Inheritance
sequence_file_url	1 String	The URL of the sequence file, for now github repository	direct
repository_id	1 String	The unique identifier of the sequence in the iGEM collection (for now, {part_...	RepositoryIdSource
repository_name	1 RepositoryName		RepositoryIdSource
type	0..1 String	Designates the class	Source
output_name	0..1 String	Used to specify the name of the output sequence	Source
database_id	0..1 Integer	The id of an entity in a database	Source
input	* SourceInput	The inputs to this source	Source
id	1 Integer	A unique identifier for a thing	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:IGEMSource
native	opencloning_linkml:IGEMSource

LinkML Source

Direct

name: IGEMSource
description: Represents the source of a sequence from an iGEM collection
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slots:
- sequence_file_url
slot_usage:
  repository_id:
    name: repository_id
    description: The unique identifier of the sequence in the iGEM collection (for
      now, {part_id}-{plasmid_backbone})
  sequence_file_url:
    name: sequence_file_url
    description: The URL of the sequence file, for now github repository
    required: true

Induced

name: IGEMSource
description: Represents the source of a sequence from an iGEM collection
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The unique identifier of the sequence in the iGEM collection (for
      now, {part_id}-{plasmid_backbone})
  sequence_file_url:
    name: sequence_file_url
    description: The URL of the sequence file, for now github repository
    required: true
attributes:
  sequence_file_url:
    name: sequence_file_url
    description: The URL of the sequence file, for now github repository
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: sequence_file_url
    owner: IGEMSource
    domain_of:
    - AddgeneIdSource
    - WekWikGeneIdSource
    - SEVASource
    - IGEMSource
    range: string
    required: true
    pattern: ^https?:\/\/(www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b([-a-zA-Z0-9()@:%_\+.~#?&//=]*)$
  repository_id:
    name: repository_id
    description: The unique identifier of the sequence in the iGEM collection (for
      now, {part_id}-{plasmid_backbone})
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_id
    owner: IGEMSource
    domain_of:
    - RepositoryIdSource
    range: string
    required: true
  repository_name:
    name: repository_name
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_name
    owner: IGEMSource
    domain_of:
    - RepositoryIdSource
    range: RepositoryName
    required: true
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: IGEMSource
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: IGEMSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: IGEMSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  input:
    name: input
    description: The inputs to this source. If the source represents external import
      of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: IGEMSource
    domain_of:
    - Source
    range: SourceInput
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: IGEMSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true