Class: GatewaySource

Represents the source of a sequence that is generated by Gateway cloning

classDiagram class GatewaySource click GatewaySource href "../GatewaySource" AssemblySource <|-- GatewaySource click AssemblySource href "../AssemblySource" GatewaySource : circular GatewaySource : database_id GatewaySource : greedy GatewaySource : id GatewaySource : input GatewaySource --> "*" SourceInput : input click SourceInput href "../SourceInput" GatewaySource : output_name GatewaySource : reaction_type GatewaySource --> "1" GatewayReactionType : reaction_type click GatewayReactionType href "../GatewayReactionType" GatewaySource : type

Inheritance

NamedThing
- Source
  - AssemblySource
    - GatewaySource

Slots

Name	Cardinality and Range	Description	Inheritance
reaction_type	1 GatewayReactionType		direct
greedy	0..1 Boolean	Whether to use a greedy consensus sequence for att sites (see https://github	direct
circular	0..1 Boolean	Whether the assembly is circular or not	AssemblySource
type	0..1 String	Designates the class	Source
output_name	0..1 String	Used to specify the name of the output sequence	Source
database_id	0..1 Integer	The id of an entity in a database	Source
input	* SourceInput	The inputs to this source	Source
id	1 Integer	A unique identifier for a thing	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:GatewaySource
native	opencloning_linkml:GatewaySource

LinkML Source

Direct

name: GatewaySource
description: Represents the source of a sequence that is generated by Gateway cloning
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: AssemblySource
attributes:
  reaction_type:
    name: reaction_type
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - GatewaySource
    range: GatewayReactionType
    required: true
  greedy:
    name: greedy
    description: Whether to use a greedy consensus sequence for att sites (see https://github.com/manulera/GateWayMine)
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    ifabsent: boolean(false)
    domain_of:
    - GatewaySource
    range: boolean

Induced

name: GatewaySource
description: Represents the source of a sequence that is generated by Gateway cloning
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: AssemblySource
attributes:
  reaction_type:
    name: reaction_type
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: reaction_type
    owner: GatewaySource
    domain_of:
    - GatewaySource
    range: GatewayReactionType
    required: true
  greedy:
    name: greedy
    description: Whether to use a greedy consensus sequence for att sites (see https://github.com/manulera/GateWayMine)
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    ifabsent: boolean(false)
    alias: greedy
    owner: GatewaySource
    domain_of:
    - GatewaySource
    range: boolean
  circular:
    name: circular
    description: Whether the assembly is circular or not
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: circular
    owner: GatewaySource
    domain_of:
    - TemplateSequence
    - ManuallyTypedSource
    - AssemblySource
    range: boolean
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: GatewaySource
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: GatewaySource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: GatewaySource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  input:
    name: input
    description: The inputs to this source. If the source represents external import
      of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: GatewaySource
    domain_of:
    - Source
    range: SourceInput
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: GatewaySource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true