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Class: BenchlingUrlSource

Represents the source of a sequence that is identified by a Benchling URL

URI: opencloning_linkml:BenchlingUrlSource

classDiagram class BenchlingUrlSource click BenchlingUrlSource href "../BenchlingUrlSource" RepositoryIdSource <|-- BenchlingUrlSource click RepositoryIdSource href "../RepositoryIdSource" BenchlingUrlSource : database_id BenchlingUrlSource : id BenchlingUrlSource : input BenchlingUrlSource --> "*" Sequence : input click Sequence href "../Sequence" BenchlingUrlSource : output BenchlingUrlSource --> "0..1" Sequence : output click Sequence href "../Sequence" BenchlingUrlSource : output_name BenchlingUrlSource : repository_id BenchlingUrlSource : repository_name BenchlingUrlSource --> "1" RepositoryName : repository_name click RepositoryName href "../RepositoryName" BenchlingUrlSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
repository_id 1
String		 The url of the gb file associated with the sequence RepositoryIdSource
repository_name 1
RepositoryName		 RepositoryIdSource
input *
Sequence		 The sequences that are an input to this source Source
output 0..1
Sequence		 Identifier of the sequence that is the output of this source Source
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:BenchlingUrlSource
native opencloning_linkml:BenchlingUrlSource

LinkML Source

Direct

name: BenchlingUrlSource
description: Represents the source of a sequence that is identified by a Benchling
  URL
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The url of the gb file associated with the sequence
    pattern: ^https:\/\/benchling\.com\/.+\.gb$

Induced

name: BenchlingUrlSource
description: Represents the source of a sequence that is identified by a Benchling
  URL
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The url of the gb file associated with the sequence
    pattern: ^https:\/\/benchling\.com\/.+\.gb$
attributes:
  repository_id:
    name: repository_id
    description: The url of the gb file associated with the sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_id
    owner: BenchlingUrlSource
    domain_of:
    - RepositoryIdSource
    range: string
    required: true
    pattern: ^https:\/\/benchling\.com\/.+\.gb$
  repository_name:
    name: repository_name
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_name
    owner: BenchlingUrlSource
    domain_of:
    - RepositoryIdSource
    range: RepositoryName
    required: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: BenchlingUrlSource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: BenchlingUrlSource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: BenchlingUrlSource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: BenchlingUrlSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: BenchlingUrlSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: BenchlingUrlSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true