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Class: BenchlingUrlSource

Represents the source of a sequence that is identified by a Benchling URL

URI: opencloning_linkml:BenchlingUrlSource

classDiagram class BenchlingUrlSource click BenchlingUrlSource href "../BenchlingUrlSource" RepositoryIdSource <|-- BenchlingUrlSource click RepositoryIdSource href "../RepositoryIdSource" BenchlingUrlSource : database_id BenchlingUrlSource : id BenchlingUrlSource : input BenchlingUrlSource --> "*" SourceInput : input click SourceInput href "../SourceInput" BenchlingUrlSource : output_name BenchlingUrlSource : repository_id BenchlingUrlSource : repository_name BenchlingUrlSource --> "1" RepositoryName : repository_name click RepositoryName href "../RepositoryName" BenchlingUrlSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
repository_id 1
String		 The url of the gb file associated with the sequence RepositoryIdSource
repository_name 1
RepositoryName		 RepositoryIdSource
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
input *
SourceInput		 The inputs to this source Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:BenchlingUrlSource
native opencloning_linkml:BenchlingUrlSource

LinkML Source

Direct

name: BenchlingUrlSource
description: Represents the source of a sequence that is identified by a Benchling
  URL
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The url of the gb file associated with the sequence
    pattern: ^https:\/\/benchling\.com\/.+\.gb$

Induced

name: BenchlingUrlSource
description: Represents the source of a sequence that is identified by a Benchling
  URL
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: RepositoryIdSource
slot_usage:
  repository_id:
    name: repository_id
    description: The url of the gb file associated with the sequence
    pattern: ^https:\/\/benchling\.com\/.+\.gb$
attributes:
  repository_id:
    name: repository_id
    description: The url of the gb file associated with the sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_id
    owner: BenchlingUrlSource
    domain_of:
    - RepositoryIdSource
    range: string
    required: true
    pattern: ^https:\/\/benchling\.com\/.+\.gb$
  repository_name:
    name: repository_name
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: repository_name
    owner: BenchlingUrlSource
    domain_of:
    - RepositoryIdSource
    range: RepositoryName
    required: true
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: BenchlingUrlSource
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: BenchlingUrlSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: BenchlingUrlSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  input:
    name: input
    description: The inputs to this source. If the source represents external import
      of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: BenchlingUrlSource
    domain_of:
    - Source
    range: SourceInput
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: BenchlingUrlSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true