Class: AssemblySource

Represents the source of a sequence that is an assembly of other sequences

classDiagram class AssemblySource click AssemblySource href "../AssemblySource" Source <|-- AssemblySource click Source href "../Source" AssemblySource <|-- PCRSource click PCRSource href "../PCRSource" AssemblySource <|-- LigationSource click LigationSource href "../LigationSource" AssemblySource <|-- HomologousRecombinationSource click HomologousRecombinationSource href "../HomologousRecombinationSource" AssemblySource <|-- GibsonAssemblySource click GibsonAssemblySource href "../GibsonAssemblySource" AssemblySource <|-- InFusionSource click InFusionSource href "../InFusionSource" AssemblySource <|-- OverlapExtensionPCRLigationSource click OverlapExtensionPCRLigationSource href "../OverlapExtensionPCRLigationSource" AssemblySource <|-- InVivoAssemblySource click InVivoAssemblySource href "../InVivoAssemblySource" AssemblySource <|-- RestrictionAndLigationSource click RestrictionAndLigationSource href "../RestrictionAndLigationSource" AssemblySource <|-- GatewaySource click GatewaySource href "../GatewaySource" AssemblySource <|-- CreLoxRecombinationSource click CreLoxRecombinationSource href "../CreLoxRecombinationSource" AssemblySource : assembly AssemblySource --> "*" AssemblyFragment : assembly click AssemblyFragment href "../AssemblyFragment" AssemblySource : circular AssemblySource : database_id AssemblySource : id AssemblySource : input AssemblySource --> "*" Sequence : input click Sequence href "../Sequence" AssemblySource : output AssemblySource --> "0..1" Sequence : output click Sequence href "../Sequence" AssemblySource : output_name AssemblySource : type

Inheritance

NamedThing
- Source
  - AssemblySource

Slots

Name	Cardinality and Range	Description	Inheritance
circular	0..1 Boolean	Whether the assembly is circular or not	direct
assembly	* AssemblyFragment	A list of the fragments that are assembled, in order	direct
input	* Sequence	The sequences that are an input to this source	Source
output	0..1 Sequence	Identifier of the sequence that is the output of this source	Source
type	0..1 String	Designates the class	Source
output_name	0..1 String	Used to specify the name of the output sequence	Source
database_id	0..1 Integer	The id of an entity in a database	Source
id	1 Integer	A unique identifier for a thing	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:AssemblySource
native	opencloning_linkml:AssemblySource

LinkML Source

Direct

name: AssemblySource
description: Represents the source of a sequence that is an assembly of other sequences
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  circular:
    name: circular
    description: Whether the assembly is circular or not
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - TemplateSequence
    - ManuallyTypedSource
    - AssemblySource
    range: boolean
  assembly:
    name: assembly
    description: A list of the fragments that are assembled, in order
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblySource
    range: AssemblyFragment
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: AssemblySource
description: Represents the source of a sequence that is an assembly of other sequences
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  circular:
    name: circular
    description: Whether the assembly is circular or not
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: circular
    owner: AssemblySource
    domain_of:
    - TemplateSequence
    - ManuallyTypedSource
    - AssemblySource
    range: boolean
  assembly:
    name: assembly
    description: A list of the fragments that are assembled, in order
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: assembly
    owner: AssemblySource
    domain_of:
    - AssemblySource
    range: AssemblyFragment
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: AssemblySource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: AssemblySource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: AssemblySource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: AssemblySource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: AssemblySource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AssemblySource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true