Class: AssemblySource

Represents the source of a sequence that is an assembly of other sequences

classDiagram class AssemblySource click AssemblySource href "../AssemblySource" Source <|-- AssemblySource click Source href "../Source" AssemblySource <|-- PCRSource click PCRSource href "../PCRSource" AssemblySource <|-- LigationSource click LigationSource href "../LigationSource" AssemblySource <|-- HomologousRecombinationSource click HomologousRecombinationSource href "../HomologousRecombinationSource" AssemblySource <|-- GibsonAssemblySource click GibsonAssemblySource href "../GibsonAssemblySource" AssemblySource <|-- InFusionSource click InFusionSource href "../InFusionSource" AssemblySource <|-- OverlapExtensionPCRLigationSource click OverlapExtensionPCRLigationSource href "../OverlapExtensionPCRLigationSource" AssemblySource <|-- InVivoAssemblySource click InVivoAssemblySource href "../InVivoAssemblySource" AssemblySource <|-- RestrictionAndLigationSource click RestrictionAndLigationSource href "../RestrictionAndLigationSource" AssemblySource <|-- GatewaySource click GatewaySource href "../GatewaySource" AssemblySource <|-- CreLoxRecombinationSource click CreLoxRecombinationSource href "../CreLoxRecombinationSource" AssemblySource : circular AssemblySource : database_id AssemblySource : id AssemblySource : input AssemblySource --> "*" SourceInput : input click SourceInput href "../SourceInput" AssemblySource : output_name AssemblySource : type

Inheritance

NamedThing
- Source
  - AssemblySource

Slots

Name	Cardinality and Range	Description	Inheritance
circular	0..1 Boolean	Whether the assembly is circular or not	direct
type	0..1 String	Designates the class	Source
output_name	0..1 String	Used to specify the name of the output sequence	Source
database_id	0..1 Integer	The id of an entity in a database	Source
input	* SourceInput	The inputs to this source	Source
id	1 Integer	A unique identifier for a thing	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:AssemblySource
native	opencloning_linkml:AssemblySource

LinkML Source

Direct

name: AssemblySource
description: Represents the source of a sequence that is an assembly of other sequences
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  circular:
    name: circular
    description: Whether the assembly is circular or not
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - TemplateSequence
    - ManuallyTypedSource
    - AssemblySource
    range: boolean

Induced

name: AssemblySource
description: Represents the source of a sequence that is an assembly of other sequences
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  circular:
    name: circular
    description: Whether the assembly is circular or not
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: circular
    owner: AssemblySource
    domain_of:
    - TemplateSequence
    - ManuallyTypedSource
    - AssemblySource
    range: boolean
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: AssemblySource
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: AssemblySource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: AssemblySource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  input:
    name: input
    description: The inputs to this source. If the source represents external import
      of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: AssemblySource
    domain_of:
    - Source
    range: SourceInput
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AssemblySource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true