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Class: AssemblyFragment

Represents a fragment in an assembly

URI: opencloning_linkml:AssemblyFragment

classDiagram class AssemblyFragment click AssemblyFragment href "../AssemblyFragment" SourceInput <|-- AssemblyFragment click SourceInput href "../SourceInput" AssemblyFragment : left_location AssemblyFragment : reverse_complemented AssemblyFragment : right_location AssemblyFragment : sequence AssemblyFragment --> "1" Sequence : sequence click Sequence href "../Sequence" AssemblyFragment : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
left_location 0..1
SequenceRange		 direct
right_location 0..1
SequenceRange		 direct
reverse_complemented 1
Boolean		 Whether the sequence is reverse complemented in the assembly direct
type 0..1
String		 Designates the class SourceInput
sequence 1
Sequence		 The input sequence SourceInput

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:AssemblyFragment
native opencloning_linkml:AssemblyFragment

LinkML Source

Direct

name: AssemblyFragment
description: Represents a fragment in an assembly
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: SourceInput
attributes:
  left_location:
    name: left_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblyFragment
    range: sequence_range
  right_location:
    name: right_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblyFragment
    range: sequence_range
  reverse_complemented:
    name: reverse_complemented
    description: Whether the sequence is reverse complemented in the assembly
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblyFragment
    range: boolean
    required: true

Induced

name: AssemblyFragment
description: Represents a fragment in an assembly
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: SourceInput
attributes:
  left_location:
    name: left_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: left_location
    owner: AssemblyFragment
    domain_of:
    - AssemblyFragment
    range: sequence_range
  right_location:
    name: right_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: right_location
    owner: AssemblyFragment
    domain_of:
    - AssemblyFragment
    range: sequence_range
  reverse_complemented:
    name: reverse_complemented
    description: Whether the sequence is reverse complemented in the assembly
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: reverse_complemented
    owner: AssemblyFragment
    domain_of:
    - AssemblyFragment
    range: boolean
    required: true
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: AssemblyFragment
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  sequence:
    name: sequence
    description: The input sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: sequence
    owner: AssemblyFragment
    domain_of:
    - Primer
    - SourceInput
    - PlannotateAnnotationReport
    range: Sequence
    required: true