Class: AssemblyFragment

Represents a fragment in an assembly

URI: opencloning_linkml:AssemblyFragment

classDiagram class AssemblyFragment click AssemblyFragment href "../AssemblyFragment" AssemblyFragment : left_location AssemblyFragment : reverse_complemented AssemblyFragment : right_location AssemblyFragment : sequence AssemblyFragment --> "1" Sequence : sequence click Sequence href "../Sequence"

Slots

Name	Cardinality and Range	Description	Inheritance
sequence	1 Sequence		direct
left_location	0..1 SequenceRange		direct
right_location	0..1 SequenceRange		direct
reverse_complemented	1 Boolean	Whether the sequence is reverse complemented in the assembly	direct

Usages

used by	used in	type	used
AssemblySource	assembly	range	AssemblyFragment
PCRSource	assembly	range	AssemblyFragment
LigationSource	assembly	range	AssemblyFragment
HomologousRecombinationSource	assembly	range	AssemblyFragment
GibsonAssemblySource	assembly	range	AssemblyFragment
InFusionSource	assembly	range	AssemblyFragment
OverlapExtensionPCRLigationSource	assembly	range	AssemblyFragment
InVivoAssemblySource	assembly	range	AssemblyFragment
RestrictionAndLigationSource	assembly	range	AssemblyFragment
GatewaySource	assembly	range	AssemblyFragment
CreLoxRecombinationSource	assembly	range	AssemblyFragment
CRISPRSource	assembly	range	AssemblyFragment

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	opencloning_linkml:AssemblyFragment
native	opencloning_linkml:AssemblyFragment

LinkML Source

Direct

name: AssemblyFragment
description: Represents a fragment in an assembly
from_schema: https://opencloning.github.io/OpenCloning_LinkML
attributes:
  sequence:
    name: sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    domain_of:
    - Primer
    - AssemblyFragment
    - PlannotateAnnotationReport
    range: Sequence
    required: true
  left_location:
    name: left_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblyFragment
    range: sequence_range
  right_location:
    name: right_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblyFragment
    range: sequence_range
  reverse_complemented:
    name: reverse_complemented
    description: Whether the sequence is reverse complemented in the assembly
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AssemblyFragment
    range: boolean
    required: true

Induced

name: AssemblyFragment
description: Represents a fragment in an assembly
from_schema: https://opencloning.github.io/OpenCloning_LinkML
attributes:
  sequence:
    name: sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    alias: sequence
    owner: AssemblyFragment
    domain_of:
    - Primer
    - AssemblyFragment
    - PlannotateAnnotationReport
    range: Sequence
    required: true
  left_location:
    name: left_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: left_location
    owner: AssemblyFragment
    domain_of:
    - AssemblyFragment
    range: sequence_range
  right_location:
    name: right_location
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: right_location
    owner: AssemblyFragment
    domain_of:
    - AssemblyFragment
    range: sequence_range
  reverse_complemented:
    name: reverse_complemented
    description: Whether the sequence is reverse complemented in the assembly
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: reverse_complemented
    owner: AssemblyFragment
    domain_of:
    - AssemblyFragment
    range: boolean
    required: true