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Class: AnnotationSource

Represents a computational step in which sequence features are annotated in a sequence

URI: opencloning_linkml:AnnotationSource

classDiagram class AnnotationSource click AnnotationSource href "../AnnotationSource" Source <|-- AnnotationSource click Source href "../Source" AnnotationSource : annotation_report AnnotationSource --> "*" AnnotationReport : annotation_report click AnnotationReport href "../AnnotationReport" AnnotationSource : annotation_tool AnnotationSource --> "1" AnnotationTool : annotation_tool click AnnotationTool href "../AnnotationTool" AnnotationSource : annotation_tool_version AnnotationSource : database_id AnnotationSource : id AnnotationSource : input AnnotationSource --> "*" SourceInput : input click SourceInput href "../SourceInput" AnnotationSource : output_name AnnotationSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
annotation_tool 1
AnnotationTool		 direct
annotation_tool_version 0..1
String		 The version of the annotation tool direct
annotation_report *
AnnotationReport		 direct
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
input *
SourceInput		 The inputs to this source Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:AnnotationSource
native opencloning_linkml:AnnotationSource

LinkML Source

Direct

name: AnnotationSource
description: Represents a computational step in which sequence features are annotated
  in a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  annotation_tool:
    name: annotation_tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AnnotationSource
    range: AnnotationTool
    required: true
  annotation_tool_version:
    name: annotation_tool_version
    description: The version of the annotation tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AnnotationSource
    range: string
  annotation_report:
    name: annotation_report
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AnnotationSource
    range: AnnotationReport
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: AnnotationSource
description: Represents a computational step in which sequence features are annotated
  in a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  annotation_tool:
    name: annotation_tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: annotation_tool
    owner: AnnotationSource
    domain_of:
    - AnnotationSource
    range: AnnotationTool
    required: true
  annotation_tool_version:
    name: annotation_tool_version
    description: The version of the annotation tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: annotation_tool_version
    owner: AnnotationSource
    domain_of:
    - AnnotationSource
    range: string
  annotation_report:
    name: annotation_report
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: annotation_report
    owner: AnnotationSource
    domain_of:
    - AnnotationSource
    range: AnnotationReport
    multivalued: true
    inlined: true
    inlined_as_list: true
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: AnnotationSource
    domain_of:
    - Sequence
    - SourceInput
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: AnnotationSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: AnnotationSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  input:
    name: input
    description: The inputs to this source. If the source represents external import
      of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: AnnotationSource
    domain_of:
    - Source
    range: SourceInput
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AnnotationSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true