Skip to content

Class: AnnotationSource

Represents a computational step in which sequence features are annotated in a sequence

URI: opencloning_linkml:AnnotationSource

classDiagram class AnnotationSource click AnnotationSource href "../AnnotationSource" Source <|-- AnnotationSource click Source href "../Source" AnnotationSource : annotation_report AnnotationSource --> "*" AnnotationReport : annotation_report click AnnotationReport href "../AnnotationReport" AnnotationSource : annotation_tool AnnotationSource --> "1" AnnotationTool : annotation_tool click AnnotationTool href "../AnnotationTool" AnnotationSource : annotation_tool_version AnnotationSource : database_id AnnotationSource : id AnnotationSource : input AnnotationSource --> "*" Sequence : input click Sequence href "../Sequence" AnnotationSource : output AnnotationSource --> "0..1" Sequence : output click Sequence href "../Sequence" AnnotationSource : output_name AnnotationSource : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
annotation_tool 1
AnnotationTool		 direct
annotation_tool_version 0..1
String		 The version of the annotation tool direct
annotation_report *
AnnotationReport		 direct
input *
Sequence		 The sequences that are an input to this source Source
output 0..1
Sequence		 Identifier of the sequence that is the output of this source Source
type 0..1
String		 Designates the class Source
output_name 0..1
String		 Used to specify the name of the output sequence Source
database_id 0..1
Integer		 The id of an entity in a database Source
id 1
Integer		 A unique identifier for a thing NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self opencloning_linkml:AnnotationSource
native opencloning_linkml:AnnotationSource

LinkML Source

Direct

name: AnnotationSource
description: Represents a computational step in which sequence features are annotated
  in a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  annotation_tool:
    name: annotation_tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AnnotationSource
    range: AnnotationTool
    required: true
  annotation_tool_version:
    name: annotation_tool_version
    description: The version of the annotation tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AnnotationSource
    range: string
  annotation_report:
    name: annotation_report
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    domain_of:
    - AnnotationSource
    range: AnnotationReport
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: AnnotationSource
description: Represents a computational step in which sequence features are annotated
  in a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: Source
attributes:
  annotation_tool:
    name: annotation_tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: annotation_tool
    owner: AnnotationSource
    domain_of:
    - AnnotationSource
    range: AnnotationTool
    required: true
  annotation_tool_version:
    name: annotation_tool_version
    description: The version of the annotation tool
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: annotation_tool_version
    owner: AnnotationSource
    domain_of:
    - AnnotationSource
    range: string
  annotation_report:
    name: annotation_report
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: annotation_report
    owner: AnnotationSource
    domain_of:
    - AnnotationSource
    range: AnnotationReport
    multivalued: true
    inlined: true
    inlined_as_list: true
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: AnnotationSource
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: AnnotationSource
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: AnnotationSource
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: AnnotationSource
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: AnnotationSource
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AnnotationSource
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true