Class: Source

Represents the source of a sequence

NOTE: this is an abstract class and should not be instantiated directly

classDiagram class Source click Source href "../Source" NamedThing <|-- Source click NamedThing href "../NamedThing" Source <|-- DatabaseSource click DatabaseSource href "../DatabaseSource" Source <|-- CollectionSource click CollectionSource href "../CollectionSource" Source <|-- ManuallyTypedSource click ManuallyTypedSource href "../ManuallyTypedSource" Source <|-- UploadedFileSource click UploadedFileSource href "../UploadedFileSource" Source <|-- RepositoryIdSource click RepositoryIdSource href "../RepositoryIdSource" Source <|-- GenomeCoordinatesSource click GenomeCoordinatesSource href "../GenomeCoordinatesSource" Source <|-- SequenceCutSource click SequenceCutSource href "../SequenceCutSource" Source <|-- AssemblySource click AssemblySource href "../AssemblySource" Source <|-- OligoHybridizationSource click OligoHybridizationSource href "../OligoHybridizationSource" Source <|-- PolymeraseExtensionSource click PolymeraseExtensionSource href "../PolymeraseExtensionSource" Source <|-- AnnotationSource click AnnotationSource href "../AnnotationSource" Source <|-- ReverseComplementSource click ReverseComplementSource href "../ReverseComplementSource" Source : database_id Source : id Source : input Source --> "*" Sequence : input click Sequence href "../Sequence" Source : output Source --> "0..1" Sequence : output click Sequence href "../Sequence" Source : output_name Source : type

Inheritance

NamedThing
- Source

Slots

Name	Cardinality and Range	Description	Inheritance
input	* Sequence	The sequences that are an input to this source	direct
output	0..1 Sequence	Identifier of the sequence that is the output of this source	direct
type	0..1 String	Designates the class	direct
output_name	0..1 String	Used to specify the name of the output sequence	direct
database_id	0..1 Integer	The id of an entity in a database	direct
id	1 Integer	A unique identifier for a thing	NamedThing

Usages

used by	used in	type	used
CollectionOption	source	range	Source
CloningStrategy	sources	range	Source

Identifier and Mapping Information

Schema Source

from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type	Mapped Value
self	schema:CreateAction
native	opencloning_linkml:Source

LinkML Source

Direct

name: Source
description: Represents the source of a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: NamedThing
abstract: true
slots:
- input
- output
- type
- output_name
- database_id
class_uri: schema:CreateAction

Induced

name: Source
description: Represents the source of a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: NamedThing
abstract: true
attributes:
  input:
    name: input
    description: The sequences that are an input to this source. If the source represents
      external import of a sequence, it's empty.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:object
    alias: input
    owner: Source
    domain_of:
    - Source
    range: Sequence
    required: false
    multivalued: true
    inlined_as_list: false
  output:
    name: output
    description: Identifier of the sequence that is the output of this source.
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:result
    alias: output
    owner: Source
    domain_of:
    - Source
    range: Sequence
    required: false
    inlined: false
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: Source
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
  output_name:
    name: output_name
    description: Used to specify the name of the output sequence
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    alias: output_name
    owner: Source
    domain_of:
    - Source
    range: string
    required: false
  database_id:
    name: database_id
    description: The id of an entity in a database
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    alias: database_id
    owner: Source
    domain_of:
    - Primer
    - Source
    - DatabaseSource
    range: integer
    required: false
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Source
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true
class_uri: schema:CreateAction