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Class: Sequence

Represents a sequence

  • NOTE: this is an abstract class and should not be instantiated directly

URI: bioschemas:DNA

classDiagram class Sequence click Sequence href "../Sequence" NamedThing <|-- Sequence click NamedThing href "../NamedThing" Sequence <|-- TemplateSequence click TemplateSequence href "../TemplateSequence" Sequence <|-- TextFileSequence click TextFileSequence href "../TextFileSequence" Sequence <|-- Primer click Primer href "../Primer" Sequence : id Sequence : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer
A unique identifier for a thing direct
type 0..1
String
Designates the class direct

Usages

used by used in type used
Source input range Sequence
Source output range Sequence
DatabaseSource input range Sequence
DatabaseSource output range Sequence
CollectionSource input range Sequence
CollectionSource output range Sequence
ManuallyTypedSource input range Sequence
ManuallyTypedSource output range Sequence
UploadedFileSource input range Sequence
UploadedFileSource output range Sequence
RepositoryIdSource input range Sequence
RepositoryIdSource output range Sequence
AddgeneIdSource input range Sequence
AddgeneIdSource output range Sequence
WekWikGeneIdSource input range Sequence
WekWikGeneIdSource output range Sequence
SEVASource input range Sequence
SEVASource output range Sequence
BenchlingUrlSource input range Sequence
BenchlingUrlSource output range Sequence
SnapGenePlasmidSource input range Sequence
SnapGenePlasmidSource output range Sequence
EuroscarfSource input range Sequence
EuroscarfSource output range Sequence
IGEMSource input range Sequence
IGEMSource output range Sequence
GenomeCoordinatesSource input range Sequence
GenomeCoordinatesSource output range Sequence
SequenceCutSource input range Sequence
SequenceCutSource output range Sequence
RestrictionEnzymeDigestionSource input range Sequence
RestrictionEnzymeDigestionSource output range Sequence
AssemblyFragment sequence range Sequence
AssemblySource input range Sequence
AssemblySource output range Sequence
PCRSource input range Sequence
PCRSource output range Sequence
LigationSource input range Sequence
LigationSource output range Sequence
HomologousRecombinationSource input range Sequence
HomologousRecombinationSource output range Sequence
GibsonAssemblySource input range Sequence
GibsonAssemblySource output range Sequence
InFusionSource input range Sequence
InFusionSource output range Sequence
OverlapExtensionPCRLigationSource input range Sequence
OverlapExtensionPCRLigationSource output range Sequence
InVivoAssemblySource input range Sequence
InVivoAssemblySource output range Sequence
RestrictionAndLigationSource input range Sequence
RestrictionAndLigationSource output range Sequence
GatewaySource input range Sequence
GatewaySource output range Sequence
CreLoxRecombinationSource input range Sequence
CreLoxRecombinationSource output range Sequence
CRISPRSource input range Sequence
CRISPRSource output range Sequence
OligoHybridizationSource input range Sequence
OligoHybridizationSource output range Sequence
PolymeraseExtensionSource input range Sequence
PolymeraseExtensionSource output range Sequence
CloningStrategy sequences range Sequence
AnnotationSource input range Sequence
AnnotationSource output range Sequence
ReverseComplementSource input range Sequence
ReverseComplementSource output range Sequence
AssociatedFile sequence_id range Sequence
SequencingFile sequence_id range Sequence

Identifier and Mapping Information

Schema Source

  • from schema: https://opencloning.github.io/OpenCloning_LinkML

Mappings

Mapping Type Mapped Value
self bioschemas:DNA
native opencloning_linkml:Sequence

LinkML Source

Direct

name: Sequence
description: Represents a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: NamedThing
abstract: true
slots:
- id
- type
class_uri: bioschemas:DNA

Induced

name: Sequence
description: Represents a sequence
from_schema: https://opencloning.github.io/OpenCloning_LinkML
is_a: NamedThing
abstract: true
attributes:
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Sequence
    domain_of:
    - NamedThing
    - Sequence
    range: integer
    required: true
  type:
    name: type
    description: Designates the class
    from_schema: https://opencloning.github.io/OpenCloning_LinkML
    rank: 1000
    designates_type: true
    alias: type
    owner: Sequence
    domain_of:
    - Sequence
    - Source
    - CollectionOptionInfo
    - AnnotationReport
    - AssociatedFile
    range: string
class_uri: bioschemas:DNA